IL_9KDU_010

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CACUCC*GCUCG

Length

11 nucleotides

Bulged bases

9KDU|1|L5|U|171, 9KDU|1|L5|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|168
9KDU|1|L5|A|169
9KDU|1|L5|C|170
9KDU|1|L5|U|171
9KDU|1|L5|C|172
9KDU|1|L5|C|173
*
9KDU|1|L5|G|262
9KDU|1|L5|C|263
9KDU|1|L5|U|264
9KDU|1|L5|C|265
9KDU|1|L5|G|266

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

Large ribosomal subunit protein uL29