IL_9KDU_022

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AUUCAAC*GCGCACUU

Length

15 nucleotides

Bulged bases

9KDU|1|L5|U|466, 9KDU|1|L5|C|695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|A|465
9KDU|1|L5|U|466
9KDU|1|L5|U|467
9KDU|1|L5|C|468
9KDU|1|L5|A|469
9KDU|1|L5|A|470
9KDU|1|L5|C|471
*
9KDU|1|L5|G|690
9KDU|1|L5|C|691
9KDU|1|L5|G|692
9KDU|1|L5|C|693
9KDU|1|L5|A|694
9KDU|1|L5|C|695
9KDU|1|L5|U|696
9KDU|1|L5|U|697

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

Large ribosomal subunit protein eL28