IL_9KDU_046

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9KDU|1|L5|A|1464, 9KDU|1|L5|G|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|G|1336
9KDU|1|L5|A|1337
9KDU|1|L5|A|1338
9KDU|1|L5|A|1339
9KDU|1|L5|G|1340
*
9KDU|1|L5|C|1462
9KDU|1|L5|U|1463
9KDU|1|L5|A|1464
9KDU|1|L5|G|1465
9KDU|1|L5|U|1466
9KDU|1|L5|A|1467
9KDU|1|L5|G|1468
9KDU|1|L5|C|1469

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain La

Large ribosomal subunit protein uL15

Chain Lj

Large ribosomal subunit protein eL37