IL_9KDU_056

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGGUAA*UAAAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|1535
9KDU|1|L5|G|1536
9KDU|1|L5|G|1537
9KDU|1|L5|U|1538
9KDU|1|L5|A|1539
9KDU|1|L5|A|1540
*
9KDU|1|L5|U|1595
9KDU|1|L5|A|1596
9KDU|1|L5|A|1597
9KDU|1|L5|A|1598
9KDU|1|L5|U|1599
9KDU|1|L5|G|1600

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LI

Large ribosomal subunit protein uL16-like

Chain LT

Large ribosomal subunit protein eL21