IL_9KDU_088

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGGAAUG*CGAGAGA

Length

14 nucleotides

Bulged bases

9KDU|1|L5|U|2415, 9KDU|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|U|2410
9KDU|1|L5|G|2411
9KDU|1|L5|G|2412
9KDU|1|L5|A|2413
9KDU|1|L5|A|2414
9KDU|1|L5|U|2415
9KDU|1|L5|G|2416
*
9KDU|1|L5|C|2426
9KDU|1|L5|G|2427
9KDU|1|L5|A|2428
9KDU|1|L5|G|2429
9KDU|1|L5|A|2430
9KDU|1|L5|G|2431
9KDU|1|L5|A|2432

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LZ

Large ribosomal subunit protein eL27

Chain Lc

Large ribosomal subunit protein eL30

Chain Lp

Large ribosomal subunit protein eL43