IL_9KDU_109

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9KDU|1|L5|A|3442, 9KDU|1|L5|C|3448, 9KDU|1|L5|C|3467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|3438
9KDU|1|L5|C|3439
9KDU|1|L5|A|3440
9KDU|1|L5|A|3441
9KDU|1|L5|A|3442
9KDU|1|L5|U|3443
9KDU|1|L5|G|3444
9KDU|1|L5|C|3445
9KDU|1|L5|C|3446
9KDU|1|L5|U|3447
9KDU|1|L5|C|3448
9KDU|1|L5|G|3449
*
9KDU|1|L5|C|3465
9KDU|1|L5|G|3466
9KDU|1|L5|C|3467
9KDU|1|L5|G|3468

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Ln

Small ribosomal subunit protein eS32

Chain S2

Small subunit ribosomal RNA; SSU rRNA