IL_9KDU_145
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CCCCGGAUAG*UGCGGAGAG
- Length
- 19 nucleotides
- Bulged bases
- 9KDU|1|L5|C|4411, 9KDU|1|L5|C|4412, 9KDU|1|L5|A|4418, 9KDU|1|L5|G|4516, 9KDU|1|L5|C|4517, 9KDU|1|L5|G|4519, 9KDU|1|L5|A|4522
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|C|4410
9KDU|1|L5|C|4411
9KDU|1|L5|C|4412
9KDU|1|L5|C|4413
9KDU|1|L5|G|4414
9KDU|1|L5|G|4415
9KDU|1|L5|A|4416
9KDU|1|L5|U|4417
9KDU|1|L5|A|4418
9KDU|1|L5|G|4419
*
9KDU|1|L5|U|4515
9KDU|1|L5|G|4516
9KDU|1|L5|C|4517
9KDU|1|L5|G|4518
9KDU|1|L5|G|4519
9KDU|1|L5|A|4520
9KDU|1|L5|G|4521
9KDU|1|L5|A|4522
9KDU|1|L5|G|4523
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LH
- Large ribosomal subunit protein uL6
- Chain LM
- Large ribosomal subunit protein eL14
- Chain LO
- Large ribosomal subunit protein uL13
- Chain LS
- Large ribosomal subunit protein eL20
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