IL_9KDU_148

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUGCGG*CCGCCC

Length

13 nucleotides

Bulged bases

9KDU|1|L5|U|4546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|G|4544
9KDU|1|L5|G|4545
9KDU|1|L5|U|4546
9KDU|1|L5|G|4547
9KDU|1|L5|C|4548
9KDU|1|L5|G|4549
9KDU|1|L5|G|4550
*
9KDU|1|L5|C|4563
9KDU|1|L5|C|4564
9KDU|1|L5|G|4565
9KDU|1|L5|C|4566
9KDU|1|L5|C|4567
9KDU|1|L5|C|4568

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14