IL_9KDU_165
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UCUAAGUACGCA*UGAAACUG
- Length
- 20 nucleotides
- Bulged bases
- 9KDU|1|S2|A|60, 9KDU|1|S2|A|61, 9KDU|1|S2|C|65, 9KDU|1|S2|C|67, 9KDU|1|S2|A|84, 9KDU|1|S2|A|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|U|57
9KDU|1|S2|C|58
9KDU|1|S2|U|59
9KDU|1|S2|A|60
9KDU|1|S2|A|61
9KDU|1|S2|G|62
9KDU|1|S2|U|63
9KDU|1|S2|A|64
9KDU|1|S2|C|65
9KDU|1|S2|G|66
9KDU|1|S2|C|67
9KDU|1|S2|A|68
*
9KDU|1|S2|U|81
9KDU|1|S2|G|82
9KDU|1|S2|A|83
9KDU|1|S2|A|84
9KDU|1|S2|A|85
9KDU|1|S2|C|86
9KDU|1|S2|U|87
9KDU|1|S2|G|88
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SY
- Small ribosomal subunit protein eS24
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