IL_9KDU_170
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9KDU|1|S2|U|362, 9KDU|1|S2|C|400, 9KDU|1|S2|C|401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|U|360
9KDU|1|S2|A|361
9KDU|1|S2|U|362
9KDU|1|S2|C|363
9KDU|1|S2|A|364
9KDU|1|S2|A|365
*
9KDU|1|S2|U|397
9KDU|1|S2|G|398
9KDU|1|S2|A|399
9KDU|1|S2|C|400
9KDU|1|S2|C|401
9KDU|1|S2|A|402
9KDU|1|S2|C|403
9KDU|1|S2|G|404
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- Small ribosomal subunit protein uS12
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