IL_9KDU_175

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCACUCCC*GGGGAG

Length

14 nucleotides

Bulged bases

9KDU|1|S2|C|498, 9KDU|1|S2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|C|492
9KDU|1|S2|C|493
9KDU|1|S2|A|494
9KDU|1|S2|C|495
9KDU|1|S2|U|496
9KDU|1|S2|C|497
9KDU|1|S2|C|498
9KDU|1|S2|C|499
*
9KDU|1|S2|G|505
9KDU|1|S2|G|506
9KDU|1|S2|G|507
9KDU|1|S2|G|508
9KDU|1|S2|A|509
9KDU|1|S2|G|510

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24