IL_9KDU_176

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AAUACAG*CCUGUAAUU

Length

16 nucleotides

Bulged bases

9KDU|1|S2|U|554, 9KDU|1|S2|U|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|A|529
9KDU|1|S2|A|530
9KDU|1|S2|U|531
9KDU|1|S2|A|532
9KDU|1|S2|C|533
9KDU|1|S2|A|534
9KDU|1|S2|G|535
*
9KDU|1|S2|C|550
9KDU|1|S2|C|551
9KDU|1|S2|U|552
9KDU|1|S2|G|553
9KDU|1|S2|U|554
9KDU|1|S2|A|555
9KDU|1|S2|A|556
9KDU|1|S2|U|557
9KDU|1|S2|U|558

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein