IL_9KDU_182
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9KDU|1|S2|A|629, 9KDU|1|S2|U|631, 9KDU|1|S2|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|G|612
9KDU|1|S2|U|613
9KDU|1|S2|G|614
9KDU|1|S2|C|615
9KDU|1|S2|C|616
9KDU|1|S2|A|617
9KDU|1|S2|G|618
*
9KDU|1|S2|C|625
9KDU|1|S2|G|626
9KDU|1|S2|G|627
9KDU|1|S2|U|628
9KDU|1|S2|A|629
9KDU|1|S2|A|630
9KDU|1|S2|U|631
9KDU|1|S2|U|632
9KDU|1|S2|C|633
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
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