IL_9KDU_196

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9KDU|1|S2|G|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|C|932
9KDU|1|S2|G|933
9KDU|1|S2|G|934
9KDU|1|S2|G|935
9KDU|1|S2|G|936
*
9KDU|1|S2|C|1008
9KDU|1|S2|A|1009
9KDU|1|S2|A|1010
9KDU|1|S2|G|1011

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SB

Small ribosomal subunit protein eS1

Chain SN

Small ribosomal subunit protein uS15

Chain Sa

Small ribosomal subunit protein eS26