IL_9KDU_198

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9KDU|1|S2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|G|953
9KDU|1|S2|C|954
9KDU|1|S2|U|955
9KDU|1|S2|A|956
9KDU|1|S2|G|957
*
9KDU|1|S2|C|968
9KDU|1|S2|U|969
9KDU|1|S2|U|970
9KDU|1|S2|G|971
9KDU|1|S2|G|972
9KDU|1|S2|A|973
9KDU|1|S2|C|974
9KDU|1|S2|C|975

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SB

Small ribosomal subunit protein eS1

Chain SO

Small ribosomal subunit protein uS11