IL_9KDU_216

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9KDU|1|S2|U|1495, 9KDU|1|S2|G|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|U|1334
9KDU|1|S2|G|1335
9KDU|1|S2|G|1336
*
9KDU|1|S2|U|1493
9KDU|1|S2|C|1494
9KDU|1|S2|U|1495
9KDU|1|S2|G|1496
9KDU|1|S2|U|1497
9KDU|1|S2|G|1498
9KDU|1|S2|A|1499

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

Small ribosomal subunit protein eS10

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14