IL_9KDU_223
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 9KDU|1|S2|G|1553, 9KDU|1|S2|C|1554, 9KDU|1|S2|C|1555, 9KDU|1|S2|U|1556, 9KDU|1|S2|A|1581, 9KDU|1|S2|C|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|G|1551
9KDU|1|S2|U|1552
9KDU|1|S2|G|1553
9KDU|1|S2|C|1554
9KDU|1|S2|C|1555
9KDU|1|S2|U|1556
9KDU|1|S2|A|1557
9KDU|1|S2|C|1558
9KDU|1|S2|C|1559
*
9KDU|1|S2|G|1578
9KDU|1|S2|U|1579
9KDU|1|S2|A|1580
9KDU|1|S2|A|1581
9KDU|1|S2|C|1582
9KDU|1|S2|C|1583
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- Small ribosomal subunit protein eS10
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14
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