IL_9KDU_224

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|S2|G|1605
9KDU|1|S2|G|1606
9KDU|1|S2|G|1607
9KDU|1|S2|A|1608
9KDU|1|S2|U|1609
9KDU|1|S2|C|1610
9KDU|1|S2|G|1611
*
9KDU|1|S2|C|1630
9KDU|1|S2|A|1631
9KDU|1|S2|U|1632
9KDU|1|S2|G|1633
9KDU|1|S2|A|1634
9KDU|1|S2|A|1635
9KDU|1|S2|C|1636

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19