IL_9KDW_032

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9KDW|1|L5|G|756, 9KDW|1|L5|C|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|753
9KDW|1|L5|A|754
9KDW|1|L5|A|755
9KDW|1|L5|G|756
9KDW|1|L5|G|757
9KDW|1|L5|U|758
9KDW|1|L5|G|759
9KDW|1|L5|G|760
*
9KDW|1|L5|U|811
9KDW|1|L5|G|812
9KDW|1|L5|U|813
9KDW|1|L5|U|814
9KDW|1|L5|A|815
9KDW|1|L5|C|816
9KDW|1|L5|A|817
9KDW|1|L5|G|818
9KDW|1|L5|C|819

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20