IL_9KDW_040

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|1239
9KDW|1|L5|G|1240
9KDW|1|L5|A|1241
9KDW|1|L5|U|1242
9KDW|1|L5|C|1243
*
9KDW|1|L5|G|1269
9KDW|1|L5|C|1270
9KDW|1|L5|G|1271
9KDW|1|L5|C|1272
9KDW|1|L5|A|1273
9KDW|1|L5|C|1274

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL18

Chain Lb

Large ribosomal subunit protein eL29