IL_9KDW_046

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9KDW|1|L5|A|1464, 9KDW|1|L5|G|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|1336
9KDW|1|L5|A|1337
9KDW|1|L5|A|1338
9KDW|1|L5|A|1339
9KDW|1|L5|G|1340
*
9KDW|1|L5|C|1462
9KDW|1|L5|U|1463
9KDW|1|L5|A|1464
9KDW|1|L5|G|1465
9KDW|1|L5|U|1466
9KDW|1|L5|A|1467
9KDW|1|L5|G|1468
9KDW|1|L5|C|1469

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain La

Large ribosomal subunit protein uL15

Chain Lj

Large ribosomal subunit protein eL37