IL_9KDW_074

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9KDW|1|L5|U|2062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|C|2059
9KDW|1|L5|C|2060
9KDW|1|L5|U|2061
9KDW|1|L5|U|2062
9KDW|1|L5|G|2063
9KDW|1|L5|A|2064
9KDW|1|L5|A|2065
9KDW|1|L5|G|2066
*
9KDW|1|L5|U|2086
9KDW|1|L5|G|2087
9KDW|1|L5|G|2088
9KDW|1|L5|A|2089
9KDW|1|L5|G|2090

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Le

Large ribosomal subunit protein eL32