IL_9KDW_104

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|U|3372
9KDW|1|L5|C|3373
9KDW|1|L5|A|3374
9KDW|1|L5|A|3375
9KDW|1|L5|A|3376
9KDW|1|L5|G|3377
9KDW|1|L5|U|3378
*
9KDW|1|L5|A|3389
9KDW|1|L5|A|3390
9KDW|1|L5|U|3391
9KDW|1|L5|G|3392
9KDW|1|L5|A|3393
9KDW|1|L5|A|3394
9KDW|1|L5|G|3395

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Li

Large ribosomal subunit protein eL36

Chain S6

Transfer RNA; tRNA