IL_9KDW_145

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGUGCGG*CCGCCC

Length

13 nucleotides

Bulged bases

9KDW|1|L5|U|4546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|L5|G|4544
9KDW|1|L5|G|4545
9KDW|1|L5|U|4546
9KDW|1|L5|G|4547
9KDW|1|L5|C|4548
9KDW|1|L5|G|4549
9KDW|1|L5|G|4550
*
9KDW|1|L5|C|4563
9KDW|1|L5|C|4564
9KDW|1|L5|G|4565
9KDW|1|L5|C|4566
9KDW|1|L5|C|4567
9KDW|1|L5|C|4568

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13