IL_9KDW_173

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AAUACAG*CCUGUAAUU

Length

16 nucleotides

Bulged bases

9KDW|1|S2|U|554, 9KDW|1|S2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|S2|A|529
9KDW|1|S2|A|530
9KDW|1|S2|U|531
9KDW|1|S2|A|532
9KDW|1|S2|C|533
9KDW|1|S2|A|534
9KDW|1|S2|G|535
*
9KDW|1|S2|C|550
9KDW|1|S2|C|551
9KDW|1|S2|U|552
9KDW|1|S2|G|553
9KDW|1|S2|U|554
9KDW|1|S2|A|555
9KDW|1|S2|A|556
9KDW|1|S2|U|557
9KDW|1|S2|U|558

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein