IL_9KDW_175

3D structure

PDB id

9KDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDW|1|S2|A|600
9KDW|1|S2|G|601
9KDW|1|S2|G|602
9KDW|1|S2|G|603
9KDW|1|S2|C|604
9KDW|1|S2|A|605
9KDW|1|S2|A|606
9KDW|1|S2|G|607
*
9KDW|1|S2|C|637
9KDW|1|S2|U|638

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SC

Small ribosomal subunit protein uS5

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein