IL_9KDW_185
3D structure
- PDB id
- 9KDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AGAGU*GCAGGCCCGAGCCGCCUGGAU
- Length
- 26 nucleotides
- Bulged bases
- 9KDW|1|S2|G|837, 9KDW|1|S2|G|839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDW|1|S2|A|817
9KDW|1|S2|G|818
9KDW|1|S2|A|819
9KDW|1|S2|G|820
9KDW|1|S2|U|821
*
9KDW|1|S2|G|829
9KDW|1|S2|C|830
9KDW|1|S2|A|831
9KDW|1|S2|G|832
9KDW|1|S2|G|833
9KDW|1|S2|C|834
9KDW|1|S2|C|835
9KDW|1|S2|C|836
9KDW|1|S2|G|837
9KDW|1|S2|A|838
9KDW|1|S2|G|839
9KDW|1|S2|C|840
9KDW|1|S2|C|841
9KDW|1|S2|G|842
9KDW|1|S2|C|843
9KDW|1|S2|C|844
9KDW|1|S2|U|845
9KDW|1|S2|G|846
9KDW|1|S2|G|847
9KDW|1|S2|A|848
9KDW|1|S2|U|849
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SY
- Small ribosomal subunit protein eS24
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