IL_9KKF_042

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGC*GCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KKF_042 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.397

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9KKF|1|S2|G|752
9KKF|1|S2|C|753
9KKF|1|S2|G|754
9KKF|1|S2|C|755
*
9KKF|1|S2|G|789
9KKF|1|S2|C|790
9KKF|1|S2|C|791

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6