IL_9KKF_067

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9KKF|1|S2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|1281
9KKF|1|S2|A|1282
9KKF|1|S2|C|1283
9KKF|1|S2|A|1284
9KKF|1|S2|G|1285
9KKF|1|S2|G|1286
9KKF|1|S2|A|1287
9KKF|1|S2|U|1288
9KKF|1|S2|U|1289
9KKF|1|S2|G|1290
*
9KKF|1|S2|C|1309
9KKF|1|S2|U|1310
9KKF|1|S2|C|1311
9KKF|1|S2|G|1312
9KKF|1|S2|A|1313
9KKF|1|S2|U|1314
9KKF|1|S2|U|1315
9KKF|1|S2|C|1316

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S12

Chain sh

Ubiquitin-40S ribosomal protein S27a