IL_9KKF_084

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|1604
9KKF|1|S2|G|1605
9KKF|1|S2|G|1606
9KKF|1|S2|A|1607
9KKF|1|S2|U|1608
9KKF|1|S2|C|1609
9KKF|1|S2|G|1610
*
9KKF|1|S2|C|1629
9KKF|1|S2|A|1630
9KKF|1|S2|U|1631
9KKF|1|S2|G|1632
9KKF|1|S2|A|1633
9KKF|1|S2|A|1634
9KKF|1|S2|C|1635

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19