IL_9KKF_107

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACCG*CGCUCAAUG

Length

15 nucleotides

Bulged bases

9KKF|1|zz|U|212, 9KKF|1|zz|U|216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|zz|C|183
9KKF|1|zz|G|184
9KKF|1|zz|A|185
9KKF|1|zz|C|186
9KKF|1|zz|C|187
9KKF|1|zz|G|188
*
9KKF|1|zz|C|209
9KKF|1|zz|G|210
9KKF|1|zz|C|211
9KKF|1|zz|U|212
9KKF|1|zz|C|213
9KKF|1|zz|A|214
9KKF|1|zz|A|215
9KKF|1|zz|U|216
9KKF|1|zz|G|217

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A