IL_9KKF_109

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGUAG*CGAAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|zz|C|255
9KKF|1|zz|G|256
9KKF|1|zz|A|257
9KKF|1|zz|G|258
9KKF|1|zz|U|259
9KKF|1|zz|A|260
9KKF|1|zz|G|261
*
9KKF|1|zz|C|272
9KKF|1|zz|G|273
9KKF|1|zz|A|274
9KKF|1|zz|A|275
9KKF|1|zz|A|276
9KKF|1|zz|G|277
9KKF|1|zz|G|278

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA