IL_9KMT_052

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9KMT|1|2|C|1215, 9KMT|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|A|1214
9KMT|1|2|C|1215
9KMT|1|2|C|1216
9KMT|1|2|A|1217
*
9KMT|1|2|U|1681
9KMT|1|2|C|1682
9KMT|1|2|C|1683
9KMT|1|2|C|1684
9KMT|1|2|U|1685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain a

Small ribosomal subunit protein eS26

Chain c

Small ribosomal subunit protein eS28