IL_9KMT_065

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GCCCGUCGCU*AAAAGUCGUAAC

Length

22 nucleotides

Bulged bases

9KMT|1|2|U|1827, 9KMT|1|2|C|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|G|1702
9KMT|1|2|C|1703
9KMT|1|2|C|1704
9KMT|1|2|C|1705
9KMT|1|2|G|1706
9KMT|1|2|U|1707
9KMT|1|2|C|1708
9KMT|1|2|G|1709
9KMT|1|2|C|1710
9KMT|1|2|U|1711
*
9KMT|1|2|A|1822
9KMT|1|2|A|1823
9KMT|1|2|A|1824
9KMT|1|2|A|1825
9KMT|1|2|G|1826
9KMT|1|2|U|1827
9KMT|1|2|C|1828
9KMT|1|2|G|1829
9KMT|1|2|U|1830
9KMT|1|2|A|1831
9KMT|1|2|A|1832
9KMT|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32