IL_9KMT_066

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CUACCGAUUGGAUGGUUUA*UUGACUAUCUAGAGGAAG

Length

37 nucleotides

Bulged bases

9KMT|1|2|A|1719, 9KMT|1|2|U|1721, 9KMT|1|2|A|1724, 9KMT|1|2|U|1725, 9KMT|1|2|U|1729, 9KMT|1|2|C|1807, 9KMT|1|2|G|1814, 9KMT|1|2|A|1815, 9KMT|1|2|G|1816, 9KMT|1|2|G|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|C|1713
9KMT|1|2|U|1714
9KMT|1|2|A|1715
9KMT|1|2|C|1716
9KMT|1|2|C|1717
9KMT|1|2|G|1718
9KMT|1|2|A|1719
9KMT|1|2|U|1720
9KMT|1|2|U|1721
9KMT|1|2|G|1722
9KMT|1|2|G|1723
9KMT|1|2|A|1724
9KMT|1|2|U|1725
9KMT|1|2|G|1726
9KMT|1|2|G|1727
9KMT|1|2|U|1728
9KMT|1|2|U|1729
9KMT|1|2|U|1730
9KMT|1|2|A|1731
*
9KMT|1|2|U|1803
9KMT|1|2|U|1804
9KMT|1|2|G|1805
9KMT|1|2|A|1806
9KMT|1|2|C|1807
9KMT|1|2|U|1808
9KMT|1|2|A|1809
9KMT|1|2|U|1810
9KMT|1|2|C|1811
9KMT|1|2|U|1812
9KMT|1|2|A|1813
9KMT|1|2|G|1814
9KMT|1|2|A|1815
9KMT|1|2|G|1816
9KMT|1|2|G|1817
9KMT|1|2|A|1818
9KMT|1|2|A|1819
9KMT|1|2|G|1820

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32