IL_9KMT_067

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUGAGGCCCUCGGAUC*GAGAAGACGGUCGAAC

Length

32 nucleotides

Bulged bases

9KMT|1|2|G|1737, 9KMT|1|2|C|1738, 9KMT|1|2|C|1739, 9KMT|1|2|U|1741, 9KMT|1|2|G|1795, 9KMT|1|2|G|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|G|1732
9KMT|1|2|U|1733
9KMT|1|2|G|1734
9KMT|1|2|A|1735
9KMT|1|2|G|1736
9KMT|1|2|G|1737
9KMT|1|2|C|1738
9KMT|1|2|C|1739
9KMT|1|2|C|1740
9KMT|1|2|U|1741
9KMT|1|2|C|1742
9KMT|1|2|G|1743
9KMT|1|2|G|1744
9KMT|1|2|A|1745
9KMT|1|2|U|1746
9KMT|1|2|C|1747
*
9KMT|1|2|G|1787
9KMT|1|2|A|1788
9KMT|1|2|G|1789
9KMT|1|2|A|1790
9KMT|1|2|A|1791
9KMT|1|2|G|1792
9KMT|1|2|A|1793
9KMT|1|2|C|1794
9KMT|1|2|G|1795
9KMT|1|2|G|1796
9KMT|1|2|U|1797
9KMT|1|2|C|1798
9KMT|1|2|G|1799
9KMT|1|2|A|1800
9KMT|1|2|A|1801
9KMT|1|2|C|1802

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8