IL_9KMU_061

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

ACUGGCUCAGCGUG*CCGUUGAACCCCAUU

Length

29 nucleotides

Bulged bases

9KMU|1|2|G|1548, 9KMU|1|2|C|1583, 9KMU|1|2|G|1584, 9KMU|1|2|U|1585, 9KMU|1|2|U|1586, 9KMU|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|A|1537
9KMU|1|2|C|1538
9KMU|1|2|U|1539
9KMU|1|2|G|1540
9KMU|1|2|G|1541
9KMU|1|2|C|1542
9KMU|1|2|U|1543
9KMU|1|2|C|1544
9KMU|1|2|A|1545
9KMU|1|2|G|1546
9KMU|1|2|C|1547
9KMU|1|2|G|1548
9KMU|1|2|U|1549
9KMU|1|2|G|1550
*
9KMU|1|2|C|1582
9KMU|1|2|C|1583
9KMU|1|2|G|1584
9KMU|1|2|U|1585
9KMU|1|2|U|1586
9KMU|1|2|G|1587
9KMU|1|2|A|1588
9KMU|1|2|A|1589
9KMU|1|2|C|1590
9KMU|1|2|C|1591
9KMU|1|2|C|1592
9KMU|1|2|C|1593
9KMU|1|2|A|1594
9KMU|1|2|U|1595
9KMU|1|2|U|1596

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain Z

Small ribosomal subunit protein eS25

Chain d

Small ribosomal subunit protein uS14