IL_9KMU_065

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUCGCUAC*GUAAAAGUC

Length

17 nucleotides

Bulged bases

9KMU|1|2|G|1709, 9KMU|1|2|C|1710, 9KMU|1|2|U|1821, 9KMU|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|G|1706
9KMU|1|2|U|1707
9KMU|1|2|C|1708
9KMU|1|2|G|1709
9KMU|1|2|C|1710
9KMU|1|2|U|1711
9KMU|1|2|A|1712
9KMU|1|2|C|1713
*
9KMU|1|2|G|1820
9KMU|1|2|U|1821
9KMU|1|2|A|1822
9KMU|1|2|A|1823
9KMU|1|2|A|1824
9KMU|1|2|A|1825
9KMU|1|2|G|1826
9KMU|1|2|U|1827
9KMU|1|2|C|1828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32