IL_9KMU_067

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCGAUUGG*CUAGAGG

Length

15 nucleotides

Bulged bases

9KMU|1|2|C|1717, 9KMU|1|2|A|1719, 9KMU|1|2|A|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|C|1716
9KMU|1|2|C|1717
9KMU|1|2|G|1718
9KMU|1|2|A|1719
9KMU|1|2|U|1720
9KMU|1|2|U|1721
9KMU|1|2|G|1722
9KMU|1|2|G|1723
*
9KMU|1|2|C|1811
9KMU|1|2|U|1812
9KMU|1|2|A|1813
9KMU|1|2|G|1814
9KMU|1|2|A|1815
9KMU|1|2|G|1816
9KMU|1|2|G|1817

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32