IL_9KMU_068

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AUGGUUUAGUGAG*CGAACUUGACUAU

Length

26 nucleotides

Bulged bases

9KMU|1|2|U|1728, 9KMU|1|2|U|1803, 9KMU|1|2|U|1804, 9KMU|1|2|A|1806, 9KMU|1|2|U|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|A|1724
9KMU|1|2|U|1725
9KMU|1|2|G|1726
9KMU|1|2|G|1727
9KMU|1|2|U|1728
9KMU|1|2|U|1729
9KMU|1|2|U|1730
9KMU|1|2|A|1731
9KMU|1|2|G|1732
9KMU|1|2|U|1733
9KMU|1|2|G|1734
9KMU|1|2|A|1735
9KMU|1|2|G|1736
*
9KMU|1|2|C|1798
9KMU|1|2|G|1799
9KMU|1|2|A|1800
9KMU|1|2|A|1801
9KMU|1|2|C|1802
9KMU|1|2|U|1803
9KMU|1|2|U|1804
9KMU|1|2|G|1805
9KMU|1|2|A|1806
9KMU|1|2|C|1807
9KMU|1|2|U|1808
9KMU|1|2|A|1809
9KMU|1|2|U|1810

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain X

Small ribosomal subunit protein uS12