IL_9KMV_007

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

9KMV|1|2|U|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMV_007 not in the Motif Atlas

Geometric match to IL_8VFS_003

Geometric discrepancy: 0.2908

The information below is about IL_8VFS_003

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9KMV|1|2|G|108
9KMV|1|2|U|109
9KMV|1|2|U|110
*
9KMV|1|2|G|351
9KMV|1|2|U|352
9KMV|1|2|C|353

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17