IL_9KMV_023

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGACUC*GAGGCCC

Length

13 nucleotides

Bulged bases

9KMV|1|2|U|538, 9KMV|1|2|G|546, 9KMV|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|534
9KMV|1|2|G|535
9KMV|1|2|A|536
9KMV|1|2|C|537
9KMV|1|2|U|538
9KMV|1|2|C|539
*
9KMV|1|2|G|544
9KMV|1|2|A|545
9KMV|1|2|G|546
9KMV|1|2|G|547
9KMV|1|2|C|548
9KMV|1|2|C|549
9KMV|1|2|C|550

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30