IL_9KMV_042

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUAGA*UCUUGGACC

Length

15 nucleotides

Bulged bases

9KMV|1|2|U|969, 9KMV|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|952
9KMV|1|2|C|953
9KMV|1|2|U|954
9KMV|1|2|A|955
9KMV|1|2|G|956
9KMV|1|2|A|957
*
9KMV|1|2|U|966
9KMV|1|2|C|967
9KMV|1|2|U|968
9KMV|1|2|U|969
9KMV|1|2|G|970
9KMV|1|2|G|971
9KMV|1|2|A|972
9KMV|1|2|C|973
9KMV|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11