IL_9KMV_047
3D structure
- PDB id
- 9KMV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KMV_047 not in the Motif Atlas
- Geometric match to IL_8GLP_245
- Geometric discrepancy: 0.0966
- The information below is about IL_8GLP_245
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.5
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 67
Unit IDs
9KMV|1|2|U|1101
9KMV|1|2|G|1102
9KMV|1|2|C|1103
*
9KMV|1|2|G|1129
9KMV|1|2|G|1130
9KMV|1|2|G|1131
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- Small ribosomal subunit protein eS1
- Chain N
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein eS17
- Chain a
- Small ribosomal subunit protein eS26
- Chain b
- Small ribosomal subunit protein eS27
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