IL_9KMV_061

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9KMV|1|2|G|1552, 9KMV|1|2|A|1556, 9KMV|1|2|C|1557, 9KMV|1|2|A|1580, 9KMV|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1550
9KMV|1|2|U|1551
9KMV|1|2|G|1552
9KMV|1|2|C|1553
9KMV|1|2|C|1554
9KMV|1|2|U|1555
9KMV|1|2|A|1556
9KMV|1|2|C|1557
9KMV|1|2|C|1558
*
9KMV|1|2|G|1577
9KMV|1|2|U|1578
9KMV|1|2|A|1579
9KMV|1|2|A|1580
9KMV|1|2|C|1581
9KMV|1|2|C|1582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14