IL_9KMV_065

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCCCGUCGCUACUACCGAUUGGAUGGUUUA*UUGACUAUCUAGAGGAAGUAAAAGUCGUAAC

Length

61 nucleotides

Bulged bases

9KMV|1|2|U|1707, 9KMV|1|2|C|1708, 9KMV|1|2|G|1709, 9KMV|1|2|C|1710, 9KMV|1|2|U|1711, 9KMV|1|2|A|1712, 9KMV|1|2|C|1713, 9KMV|1|2|A|1719, 9KMV|1|2|U|1725, 9KMV|1|2|G|1727, 9KMV|1|2|C|1807, 9KMV|1|2|A|1825, 9KMV|1|2|G|1826, 9KMV|1|2|U|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1702
9KMV|1|2|C|1703
9KMV|1|2|C|1704
9KMV|1|2|C|1705
9KMV|1|2|G|1706
9KMV|1|2|U|1707
9KMV|1|2|C|1708
9KMV|1|2|G|1709
9KMV|1|2|C|1710
9KMV|1|2|U|1711
9KMV|1|2|A|1712
9KMV|1|2|C|1713
9KMV|1|2|U|1714
9KMV|1|2|A|1715
9KMV|1|2|C|1716
9KMV|1|2|C|1717
9KMV|1|2|G|1718
9KMV|1|2|A|1719
9KMV|1|2|U|1720
9KMV|1|2|U|1721
9KMV|1|2|G|1722
9KMV|1|2|G|1723
9KMV|1|2|A|1724
9KMV|1|2|U|1725
9KMV|1|2|G|1726
9KMV|1|2|G|1727
9KMV|1|2|U|1728
9KMV|1|2|U|1729
9KMV|1|2|U|1730
9KMV|1|2|A|1731
*
9KMV|1|2|U|1803
9KMV|1|2|U|1804
9KMV|1|2|G|1805
9KMV|1|2|A|1806
9KMV|1|2|C|1807
9KMV|1|2|U|1808
9KMV|1|2|A|1809
9KMV|1|2|U|1810
9KMV|1|2|C|1811
9KMV|1|2|U|1812
9KMV|1|2|A|1813
9KMV|1|2|G|1814
9KMV|1|2|A|1815
9KMV|1|2|G|1816
9KMV|1|2|G|1817
9KMV|1|2|A|1818
9KMV|1|2|A|1819
9KMV|1|2|G|1820
9KMV|1|2|U|1821
9KMV|1|2|A|1822
9KMV|1|2|A|1823
9KMV|1|2|A|1824
9KMV|1|2|A|1825
9KMV|1|2|G|1826
9KMV|1|2|U|1827
9KMV|1|2|C|1828
9KMV|1|2|G|1829
9KMV|1|2|U|1830
9KMV|1|2|A|1831
9KMV|1|2|A|1832
9KMV|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32