IL_9KMV_066

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUGAGGCCCUCGGAUC*GAGAAGACGGUCGAAC

Length

32 nucleotides

Bulged bases

9KMV|1|2|G|1736, 9KMV|1|2|C|1738, 9KMV|1|2|U|1741, 9KMV|1|2|A|1745, 9KMV|1|2|G|1795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1732
9KMV|1|2|U|1733
9KMV|1|2|G|1734
9KMV|1|2|A|1735
9KMV|1|2|G|1736
9KMV|1|2|G|1737
9KMV|1|2|C|1738
9KMV|1|2|C|1739
9KMV|1|2|C|1740
9KMV|1|2|U|1741
9KMV|1|2|C|1742
9KMV|1|2|G|1743
9KMV|1|2|G|1744
9KMV|1|2|A|1745
9KMV|1|2|U|1746
9KMV|1|2|C|1747
*
9KMV|1|2|G|1787
9KMV|1|2|A|1788
9KMV|1|2|G|1789
9KMV|1|2|A|1790
9KMV|1|2|A|1791
9KMV|1|2|G|1792
9KMV|1|2|A|1793
9KMV|1|2|C|1794
9KMV|1|2|G|1795
9KMV|1|2|G|1796
9KMV|1|2|U|1797
9KMV|1|2|C|1798
9KMV|1|2|G|1799
9KMV|1|2|A|1800
9KMV|1|2|A|1801
9KMV|1|2|C|1802

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8