IL_9KMX_011

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9KMX|1|2|G|146, 9KMX|1|2|A|147, 9KMX|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|G|145
9KMX|1|2|G|146
9KMX|1|2|A|147
9KMX|1|2|U|148
9KMX|1|2|A|149
9KMX|1|2|A|150
9KMX|1|2|C|151
*
9KMX|1|2|G|167
9KMX|1|2|C|168
9KMX|1|2|U|169
9KMX|1|2|A|170
9KMX|1|2|A|171
9KMX|1|2|U|172
9KMX|1|2|A|173
9KMX|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24