IL_9KMX_014

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KMX|1|2|U|361, 9KMX|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMX_014 not in the Motif Atlas

Homologous match to IL_9PN5_159

Geometric discrepancy: 0.077

The information below is about IL_9PN5_159

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9KMX|1|2|U|359
9KMX|1|2|A|360
9KMX|1|2|U|361
9KMX|1|2|C|362
9KMX|1|2|A|363
9KMX|1|2|A|364
*
9KMX|1|2|U|396
9KMX|1|2|G|397
9KMX|1|2|A|398
9KMX|1|2|C|399
9KMX|1|2|C|400
9KMX|1|2|A|401
9KMX|1|2|C|402
9KMX|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12