IL_9KMX_021

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAAUACAG*CUGUAAUUG

Length

17 nucleotides

Bulged bases

9KMX|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|C|527
9KMX|1|2|A|528
9KMX|1|2|A|529
9KMX|1|2|U|530
9KMX|1|2|A|531
9KMX|1|2|C|532
9KMX|1|2|A|533
9KMX|1|2|G|534
*
9KMX|1|2|C|550
9KMX|1|2|U|551
9KMX|1|2|G|552
9KMX|1|2|U|553
9KMX|1|2|A|554
9KMX|1|2|A|555
9KMX|1|2|U|556
9KMX|1|2|U|557
9KMX|1|2|G|558

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30